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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
154
total RNA-seq
22
ATAC-seq
4
DNase-seq
3
small RNA-seq
1
RRBS
1
pCHi-C
Assay category
412
DNA binding
157
Transcription
26
DNA accessibility
1
DNA methylation
Target of assay
327
transcription factor
78
recombinant protein
68
histone modification
67
histone
53
RNA binding protein
45
narrow histone mark
22
broad histone mark
22
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
49
November, 2018
36
December, 2017
20
August, 2017
20
May, 2022
14
August, 2021
7
July, 2019
6
October, 2019
5
January, 2019
2
February, 2021
1
June, 2019
1
March, 2020
Available data
593
bigWig
561
bam
418
bed narrowPeak
376
fastq
339
bigBed narrowPeak
157
tsv
62
bed broadPeak
62
bigBed broadPeak
39
tagAlign
8
bed bed3+
3
tar
2
bedpe bed3+
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
597
Homo sapiens
Biosample type
329
cell line
267
tissue
1
primary cell
Organ
651
pancreas
623
liver
589
connective tissue
426
adipose tissue
epithelium
185
heart
164
brain
162
vasculature
156
blood vessel
128
kidney
96
limb
93
artery
71
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
15
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
597
AMP
Genome assembly (visualization)
597
hg19
507
GRCh38
Lab
563
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hic
organ_slims!
epithelium
BIOSAMPLE
ASSAY
597 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
RRBS
pCHi-C
cell line
HepG2
322
5
1
1
tissue
liver
83
147
20
2
1
1
right lobe of liver
7
2
1
1
2
primary cell
hepatic stellate cell
1
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