Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
14
ChIP-seq
2
Hi-C
2
RRBS
2
total RNA-seq
1
ATAC-seq
1
snATAC-seq
Assay category
35
DNA accessibility
14
DNA binding
2
3D chromatin structure
2
DNA methylation
2
Transcription
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
Date released
41
June, 2019
6
May, 2019
July, 2019
4
March, 2020
2
August, 2017
1
January, 2018
1
May, 2022
Available data
63
bigWig
60
bed narrowPeak
49
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
2
tsv
1
txt
Organism
55
Homo sapiens
Biosample type
46
tissue
9
primary cell
Organ
638
pancreas
574
liver
570
connective tissue
413
adipose tissue
epithelium
167
heart
151
vasculature
146
blood vessel
118
kidney
104
brain
96
limb
86
artery
70
bone element
55
blood
55
bodily fluid
55
musculature of body
33
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
Project
55
AMP
Genome assembly (visualization)
55
hg19
48
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
tagAlign
month_released!
July, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
55 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
snATAC-seq
tissue
muscle of leg
13
6
muscle of arm
17
psoas muscle
2
2
skeletal muscle tissue
2
1
1
forelimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
7
skeletal muscle cell
1
1
See all biosamples
Download