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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
7
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
14
DNA binding
7
DNA accessibility
2
3D chromatin structure
Target of assay
11
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
19
August, 2021
3
February, 2023
2
March, 2019
1
October, 2017
Available data
20
bigWig
18
bed narrowPeak
3
bed bedgraph
3
txt
2
bed bed3+
2
hic
1
bed broadPeak
1
bedpe
1
bedpe bed3+
1
fastq
Organism
25
Homo sapiens
Biosample type
15
cell line
7
in vitro differentiated cells
3
tissue
Organ
15
liver
4
connective tissue
3
pancreas
Project
25
AMP
Genome assembly (visualization)
25
hg19
2
GRCh38
Lab
1619
AMP-T2D consortium
142
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
ATAC-seq
Capture-C
Hi-C
cell line
HepG2
14
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
islet of Langerhans
2
1
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