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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
16
ChIP-seq
2
Hi-C
2
RRBS
1
ATAC-seq
1
snATAC-seq
Assay category
35
DNA accessibility
16
DNA binding
2
3D chromatin structure
2
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
narrow histone mark
Date released
37
June, 2019
10
August, 2017
4
May, 2019
2
March, 2020
1
January, 2018
July, 2019
1
May, 2022
Available data
52
bigWig
49
bed narrowPeak
43
bam
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
8
tagAlign
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
tsv
1
txt
Organism
55
Homo sapiens
Biosample type
50
tissue
5
primary cell
Organ
409
liver
179
pancreas
108
epithelium
97
kidney
95
connective tissue
87
heart
78
limb
77
vasculature
73
blood vessel
55
musculature of body
54
blood
54
bodily fluid
54
brain
32
artery
32
eye
26
adipose tissue
19
nerve
18
ureter
12
bone element
12
skeleton
12
spleen
12
vein
8
embryo
Project
55
AMP
Genome assembly (visualization)
55
hg19
41
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
files.file_type!
tsv
month_released!
July, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
55 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
RRBS
ATAC-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
4
skeletal muscle tissue
8
2
1
1
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
4
skeletal muscle cell
1
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