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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
21
ChIP-seq
8
Hi-C
6
DNase-seq
3
RRBS
2
FAIRE-seq
Assay category
77
DNA accessibility
21
DNA binding
8
3D chromatin structure
3
DNA methylation
Target of assay
histone
142
histone modification
73
broad histone mark
69
narrow histone mark
19
transcription factor
9
RNA binding protein
2
control
Date released
23
November, 2019
18
May, 2022
14
September, 2018
12
August, 2017
10
October, 2018
7
September, 2017
5
October, 2017
3
July, 2019
3
March, 2019
3
March, 2020
3
November, 2018
3
October, 2022
2
June, 2019
2
October, 2019
1
May, 2021
Available data
500
bam
466
bigWig
tsv
263
fastq
85
bed narrowPeak
40
bigBed narrowPeak
15
bed bed3+
7
hic
6
bed broadPeak
6
bedpe bed3+
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
3
cool
1
bedpe
1
hdf5
1
tagAlign
Organism
109
Homo sapiens
Biosample type
77
tissue
25
primary cell
6
cell line
1
in vitro differentiated cells
Organ
381
liver
108
pancreas
87
kidney
80
connective tissue
74
epithelium
56
heart
54
blood
54
bodily fluid
44
limb
40
musculature of body
39
vasculature
35
brain
34
blood vessel
33
eye
26
adipose tissue
19
artery
18
ureter
12
bone element
12
skeleton
8
spleen
5
vein
4
embryo
3
nerve
1
pericardium
Project
106
AMP
3
HPAP
Genome assembly (visualization)
109
hg19
93
GRCh38
Lab
84
AMP-T2D consortium
18
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
3
audit script error
Audit category:
6
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
tsv
target.investigated_as!
histone
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
41
9
2
1
1
1
body of pancreas
4
9
2
pancreas
1
1
2
1
1
pericardium
1
primary cell
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
pancreatic acinar cell
5
1
pancreatic ductal cell
4
cell line
EndoC_BH1
2
1
1
Panc1
1
1
in vitro differentiated cells
pancreatic PP cell
1
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