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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
25
ChIP-seq
22
DNase-seq
10
ATAC-seq
Assay category
54
Transcription
32
DNA accessibility
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
21
October, 2019
20
June, 2019
3
July, 2019
3
May, 2019
Available data
111
bam
103
bigWig
57
bed narrowPeak
54
tsv
43
bigBed narrowPeak
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
4
tagAlign
Organism
111
Homo sapiens
Biosample type
64
cell line
45
tissue
2
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
72
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
0
adrenal gland
Project
111
AMP
Genome assembly (visualization)
146
GRCh38
111
hg19
Lab
111
AMP-T2D consortium
files.file_type!
txt
BIOSAMPLE
ASSAY
111 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
4
8
tissue
tibial artery
18
2
1
renal pelvis
10
coronary artery
3
2
1
left renal pelvis
4
right renal pelvis
4
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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