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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
14
ChIP-seq
6
DNase-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
34
DNA accessibility
14
DNA binding
2
3D chromatin structure
1
DNA methylation
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
27
February, 2023
16
October, 2019
6
June, 2019
1
July, 2019
1
March, 2020
Available data
46
bed narrowPeak
21
bam
21
bigWig
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
51
Homo sapiens
Biosample type
30
tissue
21
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
72
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
51
AMP
Genome assembly (visualization)
51
hg19
18
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
txt
organ_slims!
thymus
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
tissue
retina
15
3
pigmented layer of retina
12
primary cell
endothelial cell of umbilical vein
12
2
2
1
retinal pigment epithelial cell
2
1
1
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