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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
18
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
398
Transcription
18
DNA binding
5
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
14
August, 2017
12
July, 2019
5
October, 2018
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
423
bigWig
421
bam
398
tsv
21
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
421
Homo sapiens
Biosample type
419
tissue
2
primary cell
Organ
636
pancreas
586
liver
563
connective tissue
421
adipose tissue
283
epithelium
182
heart
159
vasculature
155
brain
154
blood vessel
124
kidney
96
limb
93
artery
66
bone element
55
musculature of body
54
blood
54
bodily fluid
31
nerve
29
embryo
18
ureter
15
vein
14
spleen
8
skeleton
eye
1
pericardium
1
pituitary gland
Project
421
AMP
Genome assembly (visualization)
423
GRCh38
421
hg19
Lab
421
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
eye
BIOSAMPLE
ASSAY
421 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
381
1
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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