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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1276total RNA-seq
  • 1234ChIP-seq
  • 186DNase-seq
  • 172ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1400Transcription
  • 1234DNA binding
  • 363DNA accessibility
Target of assay
  • 727histone modification
  • 726histone
  • 476transcription factor
  • 387narrow histone mark
  • 338broad histone mark
  • 99RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 29control
  • 5other context
  • 5other post-translational modification
Date released
  • 569February, 2021
  • 280November, 2017
  • 276May, 2021
  • 260May, 2020
  • 252August, 2017
  • 207October, 2019
  • 187June, 2019
  • 164July, 2018
  • 97May, 2019
  • 77December, 2017
  • 72July, 2019
  • 72September, 2018
  • 71November, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40August, 2021
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 18May, 2022
  • 16March, 2020
  • 12October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
Available data
  • 3016bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2992Homo sapiens
Biosample type
  • 1648tissue
  • 574primary cell
  • 509cell line
  • 264in vitro differentiated cells
  • 3stem cell
Organ
  • 635pancreas
  • 585liver
  • 563connective tissue
  • 421adipose tissue
  • 283epithelium
  • 182heart
  • 159vasculature
  • 155brain
  • 154blood vessel
  • 124kidney
  • 96limb
  • 93artery
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 15vein
  • 14spleen
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2812AMP
  • 186T1D
Genome assembly (visualization)
  • 2998hg19
  • 2959GRCh38
Lab
  • 2800AMP-T2D consortium
  • 198Kyle Gaulton, UCSD
Audit category:
  • 200inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

2998 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue3811
islet of Langerhans2602513761
liver1478321
bone tissue58
body of pancreas226242
primary cell
monocyte538415
pancreatic beta cell107712
pancreatic alpha cell107612
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG253081
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71210
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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