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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
1
Hi-C
Assay category
19
DNA methylation
1
3D chromatin structure
Date released
15
July, 2019
4
August, 2017
1
March, 2019
Available data
3011
bigWig
2998
bam
1594
bed narrowPeak
1402
tsv
1008
fastq
963
bigBed narrowPeak
298
bed broadPeak
262
bigBed broadPeak
248
bed bed3+
238
tagAlign
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
txt
Organism
20
Homo sapiens
Biosample type
10
primary cell
10
tissue
Organ
6
epithelium
4
kidney
3
musculature of body
3
pancreas
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
20
AMP
Genome assembly (visualization)
20
hg19
17
GRCh38
Lab
19
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
20 results
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RRBS
Hi-C
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
tissue
islet of Langerhans
1
1
skeletal muscle tissue
2
brain
1
heart left ventricle
1
kidney
1
+ See 3 more…
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