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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
2
DNase-seq
1
ATAC-seq
Assay category
99
DNA binding
3
DNA accessibility
Target of assay
53
histone
53
histone modification
46
transcription factor
32
broad histone mark
21
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
41
August, 2017
2
October, 2019
1
October, 2017
Available data
2857
bigWig
2843
bam
1457
bed narrowPeak
1390
tsv
991
fastq
898
bigBed narrowPeak
261
bed broadPeak
234
bigBed broadPeak
bed bed3+
195
tagAlign
22
hic
21
bedpe bed3+
17
bed bedMethyl
17
bigBed bedMethyl
11
bed bed3
7
bed bedgraph
4
tar
txt
3
cool
2
hdf5
2
ibed
1
bedpe
Organism
96
Homo sapiens
Biosample type
58
cell line
27
tissue
16
primary cell
1
in vitro differentiated cells
Organ
58
liver
brain
13
musculature of body
13
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
connective tissue
2
vein
1
adipose tissue
Project
102
AMP
Genome assembly (visualization)
102
hg19
64
GRCh38
Lab
101
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
13
inconsistent control read length
2
inconsistent assembly
files.file_type!
bed bed3+
txt
organ_slims!
brain
BIOSAMPLE
ASSAY
102 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
pancreas
6
subcutaneous abdominal adipose tissue
1
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
in vitro differentiated cells
adipocyte
1
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