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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
110
ChIP-seq
1
ATAC-seq
Assay category
173
DNA accessibility
110
DNA binding
Target of assay
62
histone
62
histone modification
48
transcription factor
34
broad histone mark
28
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
160
June, 2019
68
November, 2017
41
August, 2017
9
November, 2018
4
October, 2017
October, 2019
1
November, 2020
Available data
2697
bigWig
2673
bam
1350
bed narrowPeak
1328
tsv
1005
fastq
848
bigBed narrowPeak
283
bed broadPeak
247
bigBed broadPeak
236
bed bed3+
194
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
7
bed bedgraph
4
txt
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
Organism
277
Homo sapiens
Biosample type
189
tissue
58
cell line
35
primary cell
1
in vitro differentiated cells
Organ
71
kidney
63
liver
46
musculature of body
37
brain
32
limb
27
heart
18
ureter
17
pancreas
12
epithelium
10
vasculature
9
connective tissue
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
283
AMP
Genome assembly (visualization)
283
hg19
268
GRCh38
Lab
282
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
October, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
283 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
brain
14
3
muscle of arm
17
heart
16
kidney
13
muscle of leg
13
+ See 31 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
choroid plexus epithelial cell
1
2
cardiac fibroblast
2
astrocyte of the hippocampus
1
+ See 12 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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