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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 183DNase-seq
  • 114ChIP-seq
  • 1ATAC-seq
Assay category
  • 184DNA accessibility
  • 114DNA binding
Target of assay
  • 65histone
  • 65histone modification
  • 49transcription factor
  • 36broad histone mark
  • 29narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 164June, 2019
  • 70November, 2017
  • 41August, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1November, 2020
Available data
  • 3016bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 292Homo sapiens
Biosample type
  • 196tissue
  • 59cell line
  • 42primary cell
  • 1in vitro differentiated cells
Organ
  • 71kidney
  • 63liver
  • 46musculature of body
  • 37brain
  • 36limb
  • 27heart
  • 18pancreas
  • 18ureter
  • 16epithelium
  • 16vasculature
  • 12blood vessel
  • 9connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 298AMP
Genome assembly (visualization)
  • 298hg19
  • 282GRCh38
Lab
  • 297AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

298 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
brain143
muscle of arm17
heart16
kidney13
muscle of leg13
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
choroid plexus epithelial cell12
in vitro differentiated cells
adipocyte1
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