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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
358
DNA binding
28
DNA accessibility
Target of assay
325
transcription factor
81
histone modification
80
histone
78
recombinant protein
55
RNA binding protein
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
241
November, 2017
49
November, 2018
43
December, 2017
20
May, 2022
13
August, 2017
13
August, 2021
4
October, 2019
2
June, 2019
1
February, 2021
Available data
565
bigWig
535
bam
386
bed narrowPeak
371
fastq
340
bigBed narrowPeak
162
tsv
57
bed broadPeak
57
bigBed broadPeak
11
bed bed3+
8
tagAlign
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
386
Homo sapiens
Biosample type
296
cell line
77
tissue
9
in vitro differentiated cells
4
primary cell
Organ
386
liver
153
pancreas
97
epithelium
97
kidney
88
heart
78
limb
72
vasculature
69
blood vessel
56
connective tissue
53
blood
53
bodily fluid
51
brain
49
musculature of body
33
artery
32
eye
19
nerve
18
ureter
12
spleen
11
adipose tissue
8
bone element
8
skeleton
8
vein
7
embryo
Project
386
AMP
Genome assembly (visualization)
386
hg19
326
GRCh38
Lab
354
AMP-T2D consortium
20
Karen Mohlke, UNC
12
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
files.file_type!
ibed
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
386 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
295
1
tissue
liver
48
20
2
right lobe of liver
5
1
1
in vitro differentiated cells
hepatocyte
9
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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