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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
42
ATAC-seq
Assay category
128
DNA binding
42
DNA accessibility
Target of assay
117
histone
117
histone modification
65
broad histone mark
52
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
114
May, 2021
38
May, 2022
16
August, 2021
2
February, 2023
Available data
260
bigWig
198
bam
170
bed narrowPeak
96
tsv
84
tagAlign
19
fastq
6
hic
4
bed bed3+
4
bedpe bed3+
3
bed bedgraph
3
cool
3
txt
1
bed broadPeak
1
bedpe
Organism
170
Homo sapiens
Biosample type
114
primary cell
38
tissue
14
cell line
4
in vitro differentiated cells
Organ
34
liver
18
pancreas
2
connective tissue
Project
86
AMP
84
T1D
Genome assembly (visualization)
188
GRCh38
170
hg19
Lab
AMP-T2D consortium
132
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
January, 2021
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
ATAC-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
tissue
liver
20
islet of Langerhans
18
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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