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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
16
ATAC-seq
7
DNase-seq
Assay category
58
DNA binding
23
DNA accessibility
Target of assay
35
histone
35
histone modification
23
transcription factor
18
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
46
August, 2017
13
June, 2019
9
February, 2021
5
October, 2018
2
August, 2021
2
November, 2020
1
February, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
570
bam
566
bigWig
474
tsv
81
bed narrowPeak
73
fastq
26
bigBed narrowPeak
25
bed bed3+
10
bed bed3
8
bed broadPeak
7
bigBed broadPeak
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tagAlign
Organism
81
Homo sapiens
Biosample type
45
in vitro differentiated cells
21
tissue
15
primary cell
Organ
liver
212
pancreas
145
epithelium
141
brain
113
heart
112
kidney
97
vasculature
93
blood vessel
92
limb
74
connective tissue
60
musculature of body
54
blood
54
bodily fluid
39
artery
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
81
AMP
Genome assembly (visualization)
81
hg19
78
GRCh38
Lab
79
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
Audit category:
6
inconsistent control read length
organ_slims!
liver
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
42
1
1
osteoblast
1
tissue
omental fat pad
3
1
2
subcutaneous adipose tissue
2
1
adipose tissue
1
1
adipose tissue(adipose white tissue)
1
distal epiphysis
1
+ See 8 more…
primary cell
mesenchymal stem cell
6
cardiac fibroblast
3
2
osteoblast
2
1
brain pericyte
1
See all biosamples
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