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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1228ChIP-seq
  • 186DNase-seq
  • 179ATAC-seq
  • 5FAIRE-seq
Assay category
  • 1228DNA binding
  • 370DNA accessibility
Target of assay
  • 763histone modification
  • 762histone
  • 460transcription factor
  • 398narrow histone mark
  • 363broad histone mark
  • 99RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 259November, 2017
  • 189October, 2019
  • 187June, 2019
  • 142August, 2017
  • 133May, 2021
  • 97May, 2019
  • 72December, 2017
  • 71November, 2018
  • 65April, 2019
  • 46September, 2018
  • 45October, 2018
  • 41August, 2021
  • 38May, 2022
  • 37November, 2019
  • 30December, 2018
  • 30February, 2023
  • 27May, 2020
  • 23February, 2021
  • 21January, 2019
  • 16February, 2018
  • 12October, 2017
  • 7July, 2019
  • 5September, 2017
  • 3March, 2020
  • 2November, 2020
Available data
  • 3016bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1592Homo sapiens
Biosample type
  • 777tissue
  • 400cell line
  • 288primary cell
  • 131in vitro differentiated cells
  • 2stem cell
Organ
  • 437liver
  • 212pancreas
  • 145epithelium
  • 141brain
  • 113heart
  • 112kidney
  • 97vasculature
  • 93blood vessel
  • 92limb
  • 74connective tissue
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 39artery
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1510AMP
  • 88T1D
Genome assembly (visualization)
  • 1632GRCh38
  • 1598hg19
Lab
  • 1428AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 63inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 48missing controlled_by
Audit category:
  • 54inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

1598 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver82220
islet of Langerhans201371
heart left ventricle2932
kidney20131
body of pancreas2624
cell line
HepG23031
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
pancreatic beta cell77
in vitro differentiated cells
adipocyte4211
neural progenitor cell1210
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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