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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
Hi-C
Assay category
9
3D chromatin structure
Date released
March, 2020
3
October, 2019
3
October, 2022
2
November, 2019
1
August, 2021
Available data
2706
bam
bigWig
1462
bed narrowPeak
1214
tsv
1008
fastq
963
bigBed narrowPeak
298
bed broadPeak
262
bigBed broadPeak
248
bed bed3+
149
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
12
hic
9
bedpe bed3+
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
1
bedpe
1
tagAlign bed3+
Organism
9
Homo sapiens
Biosample type
3
primary cell
2
cell line
2
in vitro differentiated cells
2
tissue
Organ
5
pancreas
4
epithelium
1
heart
1
liver
Project
6
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
3
inconsistent ontology term
files.file_type!
bigWig
month_released!
March, 2020
May, 2021
BIOSAMPLE
ASSAY
9 results
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Hi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
tissue
heart
1
islet of Langerhans
1
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