Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19Hi-C
  • 2pCHi-C
Assay category
  • 193D chromatin structure
Date released
  • 12March, 2020
  • 3October, 2019
  • 3October, 2022
  • 2November, 2019
  • 1August, 2021
Available data
  • 3016bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 21Homo sapiens
Biosample type
  • 9tissue
  • 6in vitro differentiated cells
  • 4primary cell
  • 2cell line
Organ
  • 6pancreas
  • 5epithelium
  • 3heart
  • 2blood vessel
  • 2liver
  • 2musculature of body
  • 2vasculature
  • 1vein
Project
  • 18AMP
  • 3HPAP
Genome assembly (visualization)
  • 21hg19
Lab
  • 17AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
Audit category:
  • 7inconsistent ontology term
  • 3audit script error
BIOSAMPLE
ASSAY

21 results

search-icontable-tab-icon
Clear Filters
Hi-C
pCHi-C
tissue
psoas muscle2
aorta1
heart1
heart left ventricle1
heart right ventricle1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)21
lymphocyte of B lineage (iPSC)11
cardiac precursors (cardiac muscle cell)1
primary cell
endothelial cell of umbilical vein1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
cell line
EndoC_BH11
HepG21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego