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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
66
single cell RNA-seq
32
total RNA-seq
22
ATAC-seq
6
RRBS
Assay category
98
Transcription
70
DNA binding
22
DNA accessibility
6
DNA methylation
Target of assay
60
histone
60
histone modification
33
narrow histone mark
27
broad histone mark
7
transcription factor
4
RNA binding protein
3
control
1
chromatin remodeller
Date released
61
September, 2018
33
July, 2018
29
April, 2018
23
December, 2017
17
August, 2017
10
February, 2018
6
July, 2019
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
311
bigWig
310
bam
190
fastq
161
tsv
157
bed narrowPeak
70
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
5
tagAlign
3
cool
2
hdf5
1
tar
Organism
196
Homo sapiens
Biosample type
163
primary cell
33
in vitro differentiated cells
Organ
391
liver
365
pancreas
179
epithelium
74
connective tissue
54
blood
54
bodily fluid
21
adipose tissue
19
brain
19
embryo
14
spleen
7
vasculature
4
kidney
3
blood vessel
3
musculature of body
2
heart
1
eye
1
pericardium
Project
196
AMP
Genome assembly (visualization)
198
GRCh38
196
hg19
1
hg18
Lab
196
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
7
inconsistent control read length
BIOSAMPLE
ASSAY
196 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RRBS
primary cell
pancreatic beta cell
7
12
10
7
pancreatic alpha cell
7
12
10
6
pancreatic ductal cell
13
9
4
4
pancreatic acinar cell
8
9
4
5
pancreatic delta cell
11
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in vitro differentiated cells
pancreatic endoderm
13
4
hepatocyte
14
Hepatic endoderm
2
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