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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
DNase-seq
7
ChIP-seq
Assay category
183
DNA accessibility
7
DNA binding
Target of assay
13
histone
13
histone modification
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
164
June, 2019
November, 2017
9
August, 2017
9
November, 2018
7
October, 2019
1
November, 2020
Available data
2390
bam
2374
bigWig
1402
tsv
985
bed narrowPeak
624
fastq
508
bigBed narrowPeak
238
bed bed3+
202
bed broadPeak
190
bigBed broadPeak
143
tagAlign
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
190
Homo sapiens
Biosample type
160
tissue
28
primary cell
1
cell line
1
in vitro differentiated cells
Organ
71
kidney
36
limb
33
musculature of body
27
heart
22
brain
18
ureter
10
epithelium
10
vasculature
8
blood vessel
8
connective tissue
5
liver
5
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
190
AMP
Genome assembly (visualization)
211
GRCh38
190
hg19
Lab
190
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
month_released!
November, 2017
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
190 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
muscle of arm
17
heart
16
brain
14
kidney
13
muscle of leg
13
+ See 28 more…
primary cell
skeletal muscle myoblast
1
7
cardiac fibroblast
2
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 14 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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