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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 745ChIP-seq
  • 186DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 745DNA binding
  • 218DNA accessibility
Target of assay
  • 401transcription factor
  • 339histone
  • 339histone modification
  • 206broad histone mark
  • 133narrow histone mark
  • 92RNA binding protein
  • 78recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 258November, 2017
  • 187June, 2019
  • 97May, 2019
  • 71November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3016bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 957Homo sapiens
Biosample type
  • 493tissue
  • 351cell line
  • 102primary cell
  • 17in vitro differentiated cells
Organ
  • 354liver
  • 97kidney
  • 91heart
  • 89pancreas
  • 84limb
  • 82vasculature
  • 78blood vessel
  • 70epithelium
  • 65brain
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 27connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 963AMP
Genome assembly (visualization)
  • 998GRCh38
  • 963hg19
Lab
  • 963AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

963 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas262
tibial nerve242
cell line
HepG2289
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte12
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