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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1294ChIP-seq
  • 1278total RNA-seq
  • 186DNase-seq
  • 124ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 1294DNA binding
  • 315DNA accessibility
  • 53D chromatin structure
Target of assay
  • 782histone modification
  • 781histone
  • 487transcription factor
  • 409narrow histone mark
  • 371broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 303May, 2021
  • 281November, 2017
  • 270August, 2017
  • 260May, 2020
  • 207October, 2019
  • 187June, 2019
  • 164July, 2018
  • 97May, 2019
  • 76July, 2019
  • 72December, 2017
  • 72September, 2018
  • 71November, 2018
  • 65April, 2019
  • 49April, 2018
  • 47October, 2018
  • 46August, 2021
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 20March, 2020
  • 20May, 2022
  • 13October, 2017
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3January, 2018
  • 3June, 2018
Available data
  • 3016bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 3010Homo sapiens
Biosample type
  • 1647tissue
  • 596primary cell
  • 517cell line
  • 254in vitro differentiated cells
  • 2stem cell
Organ
  • 617liver
  • 607pancreas
  • 567connective tissue
  • 423adipose tissue
  • 285epithelium
  • 175heart
  • 159brain
  • 153vasculature
  • 148blood vessel
  • 124kidney
  • 90limb
  • 85artery
  • 67musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 28embryo
  • 18ureter
  • 15vein
  • 14spleen
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2830AMP
  • 186T1D
Genome assembly (visualization)
  • 3016hg19
  • 2930GRCh38
  • 5hg18
Lab
  • 2756AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 192inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
BIOSAMPLE
ASSAY

3016 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
FAIRE-seq
Hi-C
tissue
adipose tissue13812
islet of Langerhans292601361
liver821472201
bone tissue58
heart left ventricle29332
primary cell
monocyte84532
CD8-positive, alpha-beta T cell3342
pancreatic beta cell710712
pancreatic alpha cell710612
pancreatic ductal cell134410
cell line
HepG23225
smooth muscle cell of the coronary artery452
GM12878541
EndoC_BH113332
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte47413
cardiac precursors (cardiac muscle cell)19
neural progenitor cell127
pancreatic endoderm124
stem cell
hESC2
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