Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
380
ChIP-seq
5
total RNA-seq
3
DNase-seq
1
ATAC-seq
1
RRBS
Assay category
380
DNA binding
5
Transcription
4
DNA accessibility
1
DNA methylation
Target of assay
318
transcription factor
78
recombinant protein
54
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
50
December, 2017
49
November, 2018
20
August, 2017
5
January, 2019
Available data
617
bigWig
585
bam
437
bed narrowPeak
390
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
390
Homo sapiens
Biosample type
313
cell line
63
tissue
14
in vitro differentiated cells
Organ
390
liver
363
pancreas
173
epithelium
73
connective tissue
54
blood
54
bodily fluid
21
adipose tissue
19
embryo
17
brain
14
spleen
6
vasculature
3
blood vessel
2
musculature of body
Project
390
AMP
Genome assembly (visualization)
390
hg19
343
GRCh38
Lab
390
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
csv
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
390 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
RRBS
cell line
HepG2
308
5
tissue
liver
51
2
1
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
Download