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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
119
total RNA-seq
75
single cell RNA-seq
45
ATAC-seq
3
DNase-seq
2
FAIRE-seq
Assay category
194
Transcription
122
DNA binding
50
DNA accessibility
Target of assay
101
histone
101
histone modification
52
broad histone mark
49
narrow histone mark
18
transcription factor
9
RNA binding protein
3
control
Date released
153
August, 2017
72
September, 2018
39
July, 2018
34
April, 2018
28
October, 2018
18
May, 2022
7
September, 2017
5
October, 2017
3
August, 2018
3
November, 2017
3
November, 2018
1
June, 2018
Available data
789
bam
755
bigWig
466
tsv
366
fastq
305
bed narrowPeak
167
bigBed narrowPeak
37
bed bed3+
30
bed broadPeak
18
tagAlign
17
bigBed broadPeak
10
hic
8
bedpe bed3+
3
cool
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
1
tar
Organism
360
Homo sapiens
Biosample type
186
tissue
180
primary cell
Organ
390
liver
363
pancreas
173
epithelium
73
connective tissue
54
blood
54
bodily fluid
21
adipose tissue
19
embryo
17
brain
14
spleen
6
vasculature
3
blood vessel
2
musculature of body
Project
366
AMP
Genome assembly (visualization)
366
hg19
359
GRCh38
Lab
347
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2020
BIOSAMPLE
ASSAY
366 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
23
91
6
19
1
1
body of pancreas
25
4
2
pancreas
13
1
primary cell
pancreatic beta cell
7
10
12
7
pancreatic alpha cell
7
10
12
6
pancreatic ductal cell
13
4
9
4
pancreatic acinar cell
8
4
9
5
pancreatic endocrine cell
23
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