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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
single cell RNA-seq
53
ChIP-seq
26
total RNA-seq
22
ATAC-seq
Assay category
92
Transcription
53
DNA binding
22
DNA accessibility
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
RNA binding protein
4
transcription factor
2
control
1
chromatin remodeller
Date released
61
September, 2018
33
July, 2018
29
April, 2018
17
August, 2017
14
December, 2017
5
September, 2017
4
November, 2017
3
August, 2018
October, 2018
1
June, 2018
Available data
275
bigWig
273
bam
167
fastq
145
tsv
137
bed narrowPeak
63
bigBed narrowPeak
15
bed bed3+
14
bed broadPeak
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
5
tagAlign
3
cool
2
hdf5
1
tar
Organism
167
Homo sapiens
Biosample type
153
primary cell
14
in vitro differentiated cells
Organ
336
liver
333
pancreas
167
epithelium
64
connective tissue
44
blood
44
bodily fluid
19
embryo
16
adipose tissue
14
brain
14
spleen
4
vasculature
2
blood vessel
2
musculature of body
Project
167
AMP
Genome assembly (visualization)
175
GRCh38
167
hg19
Lab
167
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
October, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
167 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
pancreatic beta cell
12
7
10
7
pancreatic alpha cell
12
7
10
6
pancreatic ductal cell
9
13
4
4
pancreatic acinar cell
9
8
2
5
pancreatic delta cell
11
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in vitro differentiated cells
hepatocyte
12
Hepatic endoderm
2
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