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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
306
ChIP-seq
18
ATAC-seq
2
total RNA-seq
Assay category
306
DNA binding
18
DNA accessibility
2
Transcription
Target of assay
253
transcription factor
65
recombinant protein
45
RNA binding protein
34
histone
34
histone modification
19
broad histone mark
16
control
15
chromatin remodeller
15
narrow histone mark
2
other context
2
other post-translational modification
Date released
275
November, 2017
255
August, 2017
77
December, 2017
72
September, 2018
71
November, 2018
50
July, 2018
44
April, 2018
33
October, 2018
31
February, 2018
30
December, 2018
26
January, 2019
18
May, 2022
13
October, 2017
7
September, 2017
3
August, 2018
3
June, 2018
Available data
348
bigWig
345
bam
342
bed narrowPeak
326
fastq
303
bigBed narrowPeak
70
bed broadPeak
64
bigBed broadPeak
18
tagAlign
3
tar
2
tsv
1
bed bed3+
1
txt
Organism
326
Homo sapiens
Biosample type
266
cell line
49
tissue
11
primary cell
Organ
266
liver
46
pancreas
9
brain
8
epithelium
6
vasculature
5
adipose tissue
5
connective tissue
3
blood vessel
Project
326
AMP
Genome assembly (visualization)
326
hg19
256
GRCh38
Lab
308
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
326 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
cell line
HepG2
266
tissue
body of pancreas
25
islet of Langerhans
18
omental fat pad
3
subcutaneous adipose tissue
2
pancreas
1
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic acinar cell
2
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