Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 704ChIP-seq
  • 139total RNA-seq
  • 98single cell RNA-seq
  • 49ATAC-seq
  • 12DNase-seq
  • 4RRBS
  • 2FAIRE-seq
Assay category
  • 704DNA binding
  • 237Transcription
  • 63DNA accessibility
  • 4DNA methylation
Target of assay
  • 445transcription factor
  • 228histone modification
  • 227histone
  • 117broad histone mark
  • 109narrow histone mark
  • 86RNA binding protein
  • 78recombinant protein
  • 36chromatin remodeller
  • 26control
  • 5other context
  • 5other post-translational modification
Date released
  • 275November, 2017
  • 255August, 2017
  • 77December, 2017
  • 72September, 2018
  • 71November, 2018
  • 50July, 2018
  • 44April, 2018
  • 33October, 2018
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 18May, 2022
  • 13October, 2017
  • 7September, 2017
  • 3August, 2018
  • 3June, 2018
Available data
  • 3016bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1002Homo sapiens
Biosample type
  • 367cell line
  • 294tissue
  • 226primary cell
  • 118in vitro differentiated cells
  • 3stem cell
Organ
  • 390liver
  • 363pancreas
  • 173epithelium
  • 73connective tissue
  • 54blood
  • 54bodily fluid
  • 21adipose tissue
  • 19embryo
  • 17brain
  • 14spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1008AMP
Genome assembly (visualization)
  • 1008hg19
  • 951GRCh38
  • 5hg18
Lab
  • 989AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 9inconsistent ontology term
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

1008 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
cell line
HepG23085
GM1287854
tissue
islet of Langerhans239161911
liver5121
body of pancreas2542
pancreas131
spleen1211
primary cell
pancreatic beta cell710127
pancreatic alpha cell710126
pancreatic ductal cell13494
pancreatic acinar cell8495
pancreatic endocrine cell23
in vitro differentiated cells
adipocyte481
pancreatic endoderm134
hepatocyte14
definitive endodermal cell72
primitive gut cell72
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego