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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
Hi-C
Assay category
19
3D chromatin structure
Date released
8
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
Available data
2841
bigWig
2808
bam
1477
bed narrowPeak
1332
tsv
1008
fastq
872
bigBed narrowPeak
271
bed broadPeak
235
bigBed broadPeak
234
tagAlign
223
bed bed3+
19
hic
18
bedpe bed3+
17
bed bedMethyl
17
bigBed bedMethyl
8
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
19
Homo sapiens
Biosample type
8
tissue
5
primary cell
4
in vitro differentiated cells
2
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
16
AMP
3
HPAP
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
organ_slims!
heart
skeleton
spinal cord
BIOSAMPLE
ASSAY
19 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
kidney
1
liver
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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