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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
233
ChIP-seq
Assay category
233
DNA binding
Target of assay
227
histone
227
histone modification
142
narrow histone mark
85
broad histone mark
4
transcription factor
2
control
Date released
89
May, 2021
40
October, 2019
38
August, 2017
27
May, 2020
18
November, 2017
15
August, 2021
6
October, 2017
February, 2021
Available data
2465
bigWig
2429
bam
1575
bed narrowPeak
1008
fastq
963
bigBed narrowPeak
tsv
298
bed broadPeak
262
bigBed broadPeak
248
bed bed3+
233
tagAlign
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
10
bed bed3
5
hdf5
4
tar
4
txt
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
227
Homo sapiens
Biosample type
105
tissue
99
primary cell
17
in vitro differentiated cells
12
cell line
Organ
43
brain
42
liver
14
pancreas
13
musculature of body
5
epithelium
1
adipose tissue
1
connective tissue
1
pituitary gland
Project
149
AMP
84
T1D
Genome assembly (visualization)
241
GRCh38
233
hg19
Lab
149
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
files.file_type!
tsv
month_released!
February, 2021
May, 2023
BIOSAMPLE
ASSAY
233 results
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Clear Filters
ChIP-seq
tissue
liver
27
skeletal muscle tissue
13
brain
6
islet of Langerhans
6
pancreas
6
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
3
in vitro differentiated cells
neural progenitor cell
12
cardiomyocytes
3
pancreatic PP cell
2
cell line
HepG2
12
See all biosamples
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