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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1276total RNA-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 2ATAC-seq
Assay category
  • 1400Transcription
  • 2DNA accessibility
Target of assay
  • 3control
Date released
  • 545February, 2021
  • 188May, 2020
  • 173May, 2021
  • 164July, 2018
  • 89August, 2017
  • 65July, 2019
  • 49April, 2018
  • 26September, 2018
  • 20November, 2019
  • 16October, 2019
  • 15August, 2021
  • 15February, 2018
  • 15March, 2020
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 3016bigWig
  • 2998bam
  • 1598bed narrowPeak
  • 1402tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1402Homo sapiens
Biosample type
  • 918tissue
  • 252primary cell
  • 127in vitro differentiated cells
  • 105cell line
Organ
  • 474connective tissue
  • 408pancreas
  • 398adipose tissue
  • 162liver
  • 147epithelium
  • 70heart
  • 58blood vessel
  • 58bone element
  • 58vasculature
  • 54artery
  • 14embryo
  • 12brain
  • 12kidney
  • 6musculature of body
  • 4limb
  • 4nerve
  • 1pericardium
Project
  • 1304AMP
  • 98T1D
Genome assembly (visualization)
  • 1402hg19
  • 1400GRCh38
Lab
  • 1306AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
Audit category:
  • 135inconsistent ontology term
BIOSAMPLE
ASSAY

1402 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
ATAC-seq
tissue
adipose tissue381
islet of Langerhans26061
liver1471
bone tissue58
subcutaneous adipose tissue61
primary cell
monocyte53
pancreatic alpha cell1012
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
adipocyte4
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
H1-hESC8
HepG25
early embryonic cell2
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