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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1143total RNA-seq
  • 1010ChIP-seq
  • 243ATAC-seq
  • 182DNase-seq
  • 79single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1240Transcription
  • 1010DNA binding
  • 431DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 715histone modification
  • 714histone
  • 380narrow histone mark
  • 333broad histone mark
  • 265transcription factor
  • 76RNA binding protein
  • 30control
  • 27chromatin remodeller
  • 7recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 574February, 2021
  • 316May, 2021
  • 260May, 2020
  • 217October, 2019
  • 187June, 2019
  • 151November, 2017
  • 139July, 2018
  • 133August, 2017
  • 97May, 2019
  • 91July, 2019
  • 65April, 2019
  • 60August, 2021
  • 59November, 2019
  • 50December, 2017
  • 49April, 2018
  • 45February, 2023
  • 42October, 2018
  • 39May, 2022
  • 32March, 2020
  • 28November, 2018
  • 27December, 2018
  • 17February, 2018
  • 17January, 2019
  • 7September, 2017
  • 6November, 2020
  • 6October, 2017
  • 5December, 2019
  • 3January, 2018
  • 3March, 2019
  • 3October, 2022
  • 2August, 2018
  • 2June, 2018
  • 1May, 2023
Available data
  • 2537bigWig
  • 2519bam
  • 1318bed narrowPeak
  • 1239tsv
  • 722bigBed narrowPeak
  • 528fastq
  • 281bed broadPeak
  • 252bigBed broadPeak
  • 236bed bed3+
  • 229tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2732Homo sapiens
Biosample type
  • 1583tissue
  • 513primary cell
  • 354cell line
  • 280in vitro differentiated cells
  • 3stem cell
Organ
  • 569connective tissue
  • 442pancreas
  • 422liver
  • 411adipose tissue
  • 233epithelium
  • 188heart
  • 165vasculature
  • 160brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 43blood
  • 43bodily fluid
  • 34eye
  • 31nerve
  • 25embryo
  • 18ureter
  • 17vein
  • 12skeleton
  • 11spleen
  • 2pericardium
  • 1pituitary gland
Project
  • 2544AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 2733hg19
  • 2650GRCh38
  • 5hg18
Lab
  • 2446AMP-T2D consortium
  • 238Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 207inconsistent ontology term
  • 5audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 24missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

2733 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue3823
islet of Langerhans171254116211
liver14745201111
bone tissue58
heart left ventricle3292311
primary cell
monocyte538415
CD8-positive, alpha-beta T cell4332
pancreatic alpha cell73111
pancreatic beta cell73101
endothelial cell of umbilical vein12221
cell line
HepG2163111
smooth muscle cell of the coronary artery5248
EndoC_BH1331331
GM12878421
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte44681
neural progenitor cell71210
cardiac precursors (cardiac muscle cell)1911
hepatocyte14
stem cell
hESC3
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