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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 295ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
Assay category
  • 295DNA binding
  • 163Transcription
  • 22DNA accessibility
Target of assay
  • 222transcription factor
  • 78recombinant protein
  • 69histone
  • 69histone modification
  • 38broad histone mark
  • 31narrow histone mark
  • 24RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2control
Date released
  • 143August, 2017
  • 130November, 2017
  • 72September, 2018
  • 43November, 2018
  • 27December, 2017
  • 25July, 2018
  • 14February, 2018
  • 9January, 2019
  • 7October, 2017
  • 5October, 2018
  • 3December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 480fastq
  • 479bam
  • 479bigWig
  • 280bed narrowPeak
  • 241bigBed narrowPeak
  • 163tsv
  • 17bed broadPeak
  • 14bed bed3+
  • 10bigBed broadPeak
  • 9tagAlign
Organism
  • 475Homo sapiens
Biosample type
  • 176cell line
  • 172tissue
  • 115primary cell
  • 17in vitro differentiated cells
Organ
  • 216pancreas
  • 203liver
  • 78epithelium
  • 20connective tissue
  • 15adipose tissue
  • 12blood
  • 12bodily fluid
  • 4brain
  • 4embryo
  • 3spleen
Project
  • 480AMP
Genome assembly (visualization)
  • 480hg19
  • 477GRCh38
Lab
  • 479AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 62missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

480 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
cell line
HepG21595
GM1287812
tissue
islet of Langerhans6891
liver381
white adipose tissue12
pancreas11
body of pancreas13
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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