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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 118ChIP-seq
  • 34single cell RNA-seq
  • 2DNase-seq
Assay category
  • 118DNA binding
  • 34Transcription
  • 2DNA accessibility
Target of assay
  • 56histone
  • 56histone modification
  • 56transcription factor
  • 33RNA binding protein
  • 30broad histone mark
  • 26narrow histone mark
  • 20chromatin remodeller
  • 5control
Date released
  • 46December, 2017
  • 21April, 2018
  • 20November, 2018
  • 17November, 2017
  • 17October, 2018
  • 11January, 2019
  • 11July, 2018
  • 7August, 2017
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 154bam
  • 154fastq
  • 149bigWig
  • 110bed narrowPeak
  • 87bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 2bed broadPeak
  • 2bigBed broadPeak
Organism
  • 154Homo sapiens
Biosample type
  • 43in vitro differentiated cells
  • 42cell line
  • 34primary cell
  • 32tissue
  • 3stem cell
Organ
  • 54liver
  • 44pancreas
  • 42epithelium
  • 9blood
  • 9bodily fluid
  • 9embryo
  • 6spleen
  • 5connective tissue
  • 1brain
Project
  • 154AMP
Genome assembly (visualization)
  • 158GRCh38
  • 154hg19
  • 5hg18
Lab
  • 154AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

154 results

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Clear Filters
ChIP-seq
single cell RNA-seq
DNase-seq
in vitro differentiated cells
hepatocyte14
pancreatic endoderm7
Posterior foregut5
adipocyte5
definitive endodermal cell5
cell line
HepG233
GM128789
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
mesenchymal cell4
tissue
body of pancreas17
spleen6
right lobe of liver5
liver11
brain1
stem cell
hESC3
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