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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 211ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 211DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 99transcription factor
  • 93histone
  • 93histone modification
  • 48broad histone mark
  • 45narrow histone mark
  • 22RNA binding protein
  • 19control
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 111November, 2017
  • 54August, 2017
  • 23December, 2017
  • 16November, 2018
  • 14February, 2018
  • 6October, 2017
  • 2September, 2017
Available data
  • 226fastq
  • 222bam
  • 215bigWig
  • 200bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 37bed bed3+
  • 36tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 220Homo sapiens
Biosample type
  • 109cell line
  • 45tissue
  • 36primary cell
  • 34in vitro differentiated cells
  • 2stem cell
Organ
  • 117liver
  • 34pancreas
  • 18epithelium
  • 17brain
  • 13embryo
  • 6vasculature
  • 3blood vessel
  • 3connective tissue
  • 2adipose tissue
  • 2musculature of body
  • 1spleen
Project
  • 226AMP
Genome assembly (visualization)
  • 226hg19
  • 190GRCh38
Lab
  • 226AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

226 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2109
tissue
islet of Langerhans14
brain62
pancreas8
liver421
body of pancreas2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell5
pancreatic beta cell5
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm11
primitive gut cell6
Posterior foregut4
definitive endodermal cell4
Hepatic endoderm2
stem cell
hESC2
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