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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1183ChIP-seq
  • 1155total RNA-seq
  • 212ATAC-seq
  • 176DNase-seq
  • 90single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1263Transcription
  • 1183DNA binding
  • 394DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 774histone
  • 774histone modification
  • 405narrow histone mark
  • 378transcription factor
  • 368broad histone mark
  • 85recombinant protein
  • 79RNA binding protein
  • 32control
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 574February, 2021
  • 316May, 2021
  • 260May, 2020
  • 241November, 2017
  • 217October, 2019
  • 187June, 2019
  • 170August, 2017
  • 155July, 2018
  • 97May, 2019
  • 91July, 2019
  • 75December, 2017
  • 65April, 2019
  • 60August, 2021
  • 59November, 2019
  • 45February, 2023
  • 42April, 2018
  • 42November, 2018
  • 32March, 2020
  • 32October, 2018
  • 32September, 2018
  • 31February, 2018
  • 21May, 2022
  • 13January, 2019
  • 6November, 2020
  • 6October, 2017
  • 5December, 2019
  • 3January, 2018
  • 3March, 2019
  • 3October, 2022
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
  • 2September, 2017
  • 1May, 2023
Available data
  • 2713bigWig
  • 2678bam
  • 1418bed narrowPeak
  • 1262tsv
  • 816bigBed narrowPeak
  • 687fastq
  • 287bed broadPeak
  • 252bigBed broadPeak
  • 242bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2886Homo sapiens
Biosample type
  • 1599tissue
  • 560primary cell
  • 434cell line
  • 296in vitro differentiated cells
  • 3stem cell
Organ
  • 580connective tissue
  • 557liver
  • 473pancreas
  • 418adipose tissue
  • 250epithelium
  • 188heart
  • 165vasculature
  • 163brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 12blood
  • 12bodily fluid
  • 12skeleton
  • 6spleen
  • 2pericardium
  • 1pituitary gland
Project
  • 2703AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 2892hg19
  • 2812GRCh38
  • 5hg18
Lab
  • 2623AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 214inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 79missing controlled_by
Audit category:
  • 48inconsistent control read length
  • 3inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

2892 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue13823
liver7414720111
islet of Langerhans311692316211
bone tissue58
heart left ventricle2932311
primary cell
monocyte845315
CD8-positive, alpha-beta T cell3342
pancreatic endocrine cell23
pancreatic ductal cell138
pancreatic acinar cell8101
cell line
HepG2274111
smooth muscle cell of the coronary artery4528
EndoC_BH1133331
GM12878111
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte48481
neural progenitor cell12710
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm134
stem cell
hESC3
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