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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
122
ChIP-seq
49
ATAC-seq
16
single cell RNA-seq
10
DNase-seq
Assay category
140
Transcription
122
DNA binding
59
DNA accessibility
Target of assay
109
transcription factor
21
RNA binding protein
11
chromatin remodeller
10
histone modification
9
histone
6
narrow histone mark
3
broad histone mark
3
other context
3
other post-translational modification
Date released
106
August, 2017
40
November, 2017
40
September, 2018
29
November, 2018
28
December, 2018
18
May, 2022
15
October, 2018
13
January, 2019
9
July, 2018
7
April, 2018
7
October, 2017
5
September, 2017
2
December, 2017
1
August, 2018
1
June, 2018
Available data
321
fastq
320
bam
303
bigWig
180
bed narrowPeak
147
bigBed narrowPeak
140
tsv
11
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
Organism
321
Homo sapiens
Biosample type
156
tissue
96
cell line
68
primary cell
1
in vitro differentiated cells
Organ
185
pancreas
68
liver
61
epithelium
43
blood
43
bodily fluid
9
connective tissue
8
adipose tissue
8
spleen
1
brain
Project
321
AMP
Genome assembly (visualization)
321
hg19
315
GRCh38
Lab
302
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
321 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
tissue
islet of Langerhans
91
19
body of pancreas
8
4
2
liver
9
2
spleen
6
1
1
omental fat pad
3
1
1
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cell line
HepG2
5
48
GM12878
43
primary cell
pancreatic alpha cell
10
6
3
pancreatic beta cell
10
7
2
pancreatic acinar cell
4
5
2
pancreatic ductal cell
4
4
2
pancreatic cell
3
+ See 3 more…
in vitro differentiated cells
adipocyte
1
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