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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 124total RNA-seq
  • 122ChIP-seq
  • 49ATAC-seq
  • 16single cell RNA-seq
  • 10DNase-seq
Assay category
  • 140Transcription
  • 122DNA binding
  • 59DNA accessibility
Target of assay
  • 109transcription factor
  • 21RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 106August, 2017
  • 40November, 2017
  • 40September, 2018
  • 29November, 2018
  • 28December, 2018
  • 18May, 2022
  • 15October, 2018
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 7October, 2017
  • 5September, 2017
  • 2December, 2017
  • 1August, 2018
  • 1June, 2018
Available data
  • 321fastq
  • 320bam
  • 303bigWig
  • 180bed narrowPeak
  • 147bigBed narrowPeak
  • 140tsv
  • 11bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
Organism
  • 321Homo sapiens
Biosample type
  • 156tissue
  • 96cell line
  • 68primary cell
  • 1in vitro differentiated cells
Organ
  • 185pancreas
  • 68liver
  • 61epithelium
  • 43blood
  • 43bodily fluid
  • 9connective tissue
  • 8adipose tissue
  • 8spleen
  • 1brain
Project
  • 321AMP
Genome assembly (visualization)
  • 321hg19
  • 315GRCh38
Lab
  • 302AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

321 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
tissue
islet of Langerhans9119
body of pancreas842
liver92
spleen611
omental fat pad311
cell line
HepG2548
GM1287843
primary cell
pancreatic alpha cell1063
pancreatic beta cell1072
pancreatic acinar cell452
pancreatic ductal cell442
pancreatic cell3
in vitro differentiated cells
adipocyte1
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