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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 584ChIP-seq
  • 83single cell RNA-seq
  • 15total RNA-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
Assay category
  • 584DNA binding
  • 98Transcription
  • 5DNA accessibility
  • 4DNA methylation
Target of assay
  • 336transcription factor
  • 220histone
  • 220histone modification
  • 114broad histone mark
  • 105narrow histone mark
  • 78recombinant protein
  • 65RNA binding protein
  • 26control
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 236November, 2017
  • 151August, 2017
  • 75December, 2017
  • 42July, 2018
  • 42November, 2018
  • 37April, 2018
  • 32September, 2018
  • 31February, 2018
  • 18October, 2018
  • 13January, 2019
  • 6October, 2017
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
  • 2September, 2017
Available data
  • 691fastq
  • 687bam
  • 678bigWig
  • 519bed narrowPeak
  • 378bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 36tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3tar
Organism
  • 685Homo sapiens
Biosample type
  • 272cell line
  • 161primary cell
  • 138tissue
  • 117in vitro differentiated cells
  • 3stem cell
Organ
  • 323liver
  • 179pancreas
  • 113epithelium
  • 64connective tissue
  • 19embryo
  • 16brain
  • 13adipose tissue
  • 11blood
  • 11bodily fluid
  • 6spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 691AMP
Genome assembly (visualization)
  • 691hg19
  • 639GRCh38
  • 5hg18
Lab
  • 691AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 9inconsistent ontology term
Audit category:
  • 80missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

691 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RRBS
DNase-seq
FAIRE-seq
cell line
HepG2261
GM1287811
primary cell
pancreatic endocrine cell23
pancreatic ductal cell137
pancreatic alpha cell710
pancreatic beta cell710
skeletal muscle myoblast1511
tissue
liver421
islet of Langerhans23611
body of pancreas17
pancreas131
white adipose tissue12
in vitro differentiated cells
adipocyte48
pancreatic endoderm134
hepatocyte14
definitive endodermal cell72
primitive gut cell72
stem cell
hESC3
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