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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1188ChIP-seq
  • 1181total RNA-seq
  • 238ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1305Transcription
  • 1188DNA binding
  • 430DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 670histone modification
  • 669histone
  • 487transcription factor
  • 361narrow histone mark
  • 307broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 29control
  • 5other context
  • 5other post-translational modification
Date released
  • 574February, 2021
  • 281November, 2017
  • 276August, 2017
  • 217October, 2019
  • 215May, 2020
  • 187June, 2019
  • 164July, 2018
  • 141May, 2021
  • 97May, 2019
  • 91July, 2019
  • 77December, 2017
  • 72September, 2018
  • 71November, 2018
  • 65April, 2019
  • 60August, 2021
  • 59November, 2019
  • 49April, 2018
  • 47October, 2018
  • 45February, 2023
  • 32March, 2020
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 21May, 2022
  • 13October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 2800bam
  • 2796bigWig
  • 1466bed narrowPeak
  • 1306tsv
  • 990fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 248bed bed3+
  • 154tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2969Homo sapiens
Biosample type
  • 1737tissue
  • 530cell line
  • 413primary cell
  • 292in vitro differentiated cells
  • 3stem cell
Organ
  • 640pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 2966AMP
  • 6T1D
  • 3HPAP
Genome assembly (visualization)
  • 2975hg19
  • 2947GRCh38
  • 5hg18
Lab
  • 2925AMP-T2D consortium
  • Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 210inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

2975 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue13823
islet of Langerhans312602416211
liver83147202111
bone tissue58
heart left ventricle2932311
cell line
HepG23225111
smooth muscle cell of the coronary artery4528
GM12878541
EndoC_BH1133331
H1-hESC8
primary cell
pancreatic beta cell7107121
pancreatic alpha cell7106121
pancreatic ductal cell134410
pancreatic acinar cell845121
pancreatic endocrine cell23
in vitro differentiated cells
adipocyte484811
cardiomyocytes359
neural progenitor cell12710
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm134
stem cell
hESC3
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