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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
123
DNA binding
10
DNA accessibility
Target of assay
103
transcription factor
30
histone
30
histone modification
25
RNA binding protein
15
broad histone mark
narrow histone mark
13
recombinant protein
10
chromatin remodeller
5
control
3
other context
3
other post-translational modification
Date released
574
February, 2021
267
November, 2017
216
August, 2017
188
May, 2020
176
June, 2019
164
July, 2018
139
May, 2021
98
October, 2019
91
July, 2019
71
November, 2018
63
May, 2019
62
December, 2017
57
September, 2018
55
November, 2019
49
April, 2018
42
April, 2019
42
February, 2023
36
October, 2018
31
August, 2021
30
December, 2018
29
March, 2020
23
February, 2018
23
January, 2019
11
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
1
May, 2022
1
May, 2023
Available data
133
bam
133
fastq
128
bed narrowPeak
128
bigWig
114
bigBed narrowPeak
19
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
Organism
133
Homo sapiens
Biosample type
54
cell line
51
tissue
26
in vitro differentiated cells
2
stem cell
Organ
92
liver
12
blood
12
bodily fluid
9
epithelium
5
embryo
4
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
133
AMP
Genome assembly (visualization)
141
GRCh38
133
hg19
Lab
133
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
14
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
133 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
42
GM12878
12
tissue
liver
33
2
right lobe of liver
5
1
spleen
3
1
body of pancreas
2
brain
2
+ See 2 more…
in vitro differentiated cells
hepatocyte
9
pancreatic endoderm
5
Posterior foregut
4
definitive endodermal cell
4
primitive gut cell
4
stem cell
hESC
2
See all biosamples
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