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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
98
total RNA-seq
23
ATAC-seq
3
Hi-C
Assay category
117
DNA binding
98
Transcription
23
DNA accessibility
3
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
175
May, 2021
45
May, 2020
18
May, 2022
3
October, 2022
Available data
220
bigWig
198
bam
132
bed narrowPeak
96
tsv
84
tagAlign
18
fastq
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
241
Homo sapiens
Biosample type
218
primary cell
18
tissue
5
in vitro differentiated cells
Organ
21
pancreas
3
epithelium
Project
180
T1D
58
AMP
3
HPAP
Genome assembly (visualization)
241
hg19
190
GRCh38
Lab
2925
AMP-T2D consortium
238
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
3
audit script error
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
241 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 23 more…
tissue
islet of Langerhans
18
in vitro differentiated cells
embryonic stem cell
5
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