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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
98
total RNA-seq
24
ATAC-seq
Assay category
114
DNA binding
98
Transcription
24
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
control
Date released
172
May, 2021
45
May, 2020
18
May, 2022
1
October, 2017
Available data
218
bigWig
198
bam
132
bed narrowPeak
96
tsv
84
tagAlign
19
fastq
2
bed bed3+
1
bed broadPeak
Organism
236
Homo sapiens
Biosample type
212
primary cell
19
tissue
5
in vitro differentiated cells
Organ
19
pancreas
Project
180
T1D
56
AMP
Genome assembly (visualization)
236
hg19
181
GRCh38
Lab
2891
AMP-T2D consortium
235
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
month_released!
December, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
236 results
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ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
30
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
tissue
islet of Langerhans
19
in vitro differentiated cells
embryonic stem cell
5
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