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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
23
ATAC-seq
3
ChIP-seq
Assay category
98
Transcription
23
DNA accessibility
3
DNA binding
Target of assay
114
histone
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
61
May, 2021
45
May, 2020
18
May, 2022
Available data
114
bam
106
bigWig
96
tsv
18
bed narrowPeak
18
fastq
2
bed bed3+
Organism
124
Homo sapiens
Biosample type
101
primary cell
18
tissue
5
in vitro differentiated cells
Organ
18
pancreas
Project
96
T1D
28
AMP
Genome assembly (visualization)
124
hg19
96
GRCh38
Lab
2258
AMP-T2D consortium
124
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
0
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
lab.title!
Bing Ren, UCSD
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
124 results
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total RNA-seq
ATAC-seq
ChIP-seq
primary cell
monocyte
53
CD8-positive, alpha-beta T cell
4
3
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
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tissue
islet of Langerhans
18
in vitro differentiated cells
embryonic stem cell
5
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