Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 117ChIP-seq
  • 98total RNA-seq
  • 23ATAC-seq
Assay category
  • 117DNA binding
  • 98Transcription
  • 23DNA accessibility
Target of assay
  • 114histone
  • 114histone modification
  • 64broad histone mark
  • 50narrow histone mark
  • 3control
Date released
  • 175May, 2021
  • 45May, 2020
  • 18May, 2022
Available data
  • 220bigWig
  • 198bam
  • 132bed narrowPeak
  • 96tsv
  • 84tagAlign
  • 18fastq
  • 2bed bed3+
Organism
  • 238Homo sapiens
Biosample type
  • 215primary cell
  • 18tissue
  • 5in vitro differentiated cells
Organ
  • 18pancreas
Project
  • 180T1D
  • 58AMP
Genome assembly (visualization)
  • 238hg19
  • 180GRCh38
Lab
  • 2925AMP-T2D consortium
  • 238Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
BIOSAMPLE
ASSAY

238 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte8453
CD8-positive, alpha-beta T cell334
B cell2
T follicular helper cell2
T-helper 1 cell2
tissue
islet of Langerhans18
in vitro differentiated cells
embryonic stem cell5
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego