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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
150
total RNA-seq
22
ATAC-seq
4
DNase-seq
2
Hi-C
1
RRBS
1
pCHi-C
Assay category
412
DNA binding
150
Transcription
26
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
327
transcription factor
78
recombinant protein
68
histone modification
67
histone
53
RNA binding protein
45
narrow histone mark
22
broad histone mark
22
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
49
November, 2018
36
December, 2017
20
August, 2017
20
May, 2022
15
August, 2021
July, 2019
6
October, 2019
5
January, 2019
2
February, 2021
2
March, 2020
1
June, 2019
Available data
586
bigWig
554
bam
418
bed narrowPeak
376
fastq
339
bigBed narrowPeak
150
tsv
62
bed broadPeak
62
bigBed broadPeak
39
tagAlign
8
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
592
Homo sapiens
Biosample type
330
cell line
261
tissue
1
primary cell
Organ
652
pancreas
616
liver
571
connective tissue
414
adipose tissue
epithelium
171
heart
155
vasculature
150
blood vessel
147
brain
118
kidney
96
limb
90
artery
70
bone element
68
musculature of body
55
blood
55
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
1
pituitary gland
Project
592
AMP
Genome assembly (visualization)
592
hg19
500
GRCh38
Lab
557
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
July, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
592 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
pCHi-C
cell line
HepG2
322
5
1
1
1
tissue
liver
83
145
20
2
1
1
right lobe of liver
7
1
1
primary cell
hepatic stellate cell
1
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