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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
108
DNA binding
12
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
108
histone
108
histone modification
85
narrow histone mark
23
broad histone mark
3
control
Date released
78
October, 2019
25
May, 2019
June, 2019
17
July, 2019
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
Available data
124
bigWig
121
bam
109
bed narrowPeak
37
tagAlign
34
bigBed narrowPeak
12
tsv
8
fastq
5
bed bed3+
5
bed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bed bed3
1
tagAlign bed3+
Organism
129
Homo sapiens
Biosample type
122
tissue
7
primary cell
Organ
656
pancreas
575
connective tissue
425
adipose tissue
357
liver
293
epithelium
158
heart
153
vasculature
152
blood vessel
129
brain
91
artery
70
bone element
64
limb
56
kidney
blood
55
bodily fluid
32
musculature of body
31
nerve
29
embryo
28
eye
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
129
AMP
Genome assembly (visualization)
129
hg19
124
GRCh38
Lab
129
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
June, 2019
November, 2017
organ_slims!
blood
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
DNase-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
1
2
1
1
temporal lobe
13
1
1
angular gyrus
14
superior frontal gyrus
4
frontal cortex
1
1
1
+ See 63 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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