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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
24
DNase-seq
5
Hi-C
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
1
ATAC-seq
Assay category
135
DNA binding
27
DNA accessibility
12
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
129
histone
129
histone modification
97
narrow histone mark
32
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
94
October, 2019
25
May, 2019
20
June, 2019
17
July, 2019
15
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
1
March, 2020
Available data
174
bigWig
170
bam
154
bed narrowPeak
78
bigBed narrowPeak
43
tagAlign
41
bed broadPeak
32
bigBed broadPeak
27
bed bed3+
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
181
Homo sapiens
Biosample type
143
tissue
38
primary cell
Organ
658
pancreas
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
181
AMP
Genome assembly (visualization)
229
GRCh38
181
hg19
Lab
181
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
3
missing controlled_by
month_released!
March, 2023
organ_slims!
liver
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
ATAC-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
endothelial cell of umbilical vein
12
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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