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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
Assay category
61
DNA binding
Target of assay
341
transcription factor
145
histone modification
144
histone
78
recombinant protein
77
narrow histone mark
67
broad histone mark
61
RNA binding protein
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
31
November, 2017
19
November, 2018
4
December, 2017
3
April, 2019
2
May, 2019
1
August, 2021
1
June, 2019
Available data
61
bed narrowPeak
61
bigWig
60
bam
60
bigBed narrowPeak
54
fastq
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
61
Homo sapiens
Biosample type
51
cell line
7
tissue
2
in vitro differentiated cells
1
primary cell
Organ
55
liver
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
6
heart
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
2
kidney
1
artery
1
eye
Project
61
AMP
Genome assembly (visualization)
62
GRCh38
61
hg19
Lab
60
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
month_released!
May, 2022
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
cell line
HepG2
51
tissue
heart left ventricle
3
coronary artery
1
liver
1
right atrium auricular region
1
right lobe of liver
1
in vitro differentiated cells
hepatocyte
2
primary cell
cardiac fibroblast
1
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