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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1279total RNA-seq
  • 1024ChIP-seq
  • 261ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1403Transcription
  • 1024DNA binding
  • 453DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 760histone modification
  • 759histone
  • 397narrow histone mark
  • 361broad histone mark
  • 249transcription factor
  • 66RNA binding protein
  • 21chromatin remodeller
  • 20recombinant protein
  • 16control
  • 3other context
  • 3other post-translational modification
Date released
  • 574February, 2021
  • 316May, 2021
  • November, 2017
  • 276August, 2017
  • 260May, 2020
  • 217October, 2019
  • 187June, 2019
  • 164July, 2018
  • 97May, 2019
  • 91July, 2019
  • 77December, 2017
  • 72September, 2018
  • 71November, 2018
  • 65April, 2019
  • 60August, 2021
  • 59November, 2019
  • 49April, 2018
  • 47October, 2018
  • 45February, 2023
  • 39May, 2022
  • 32March, 2020
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 13October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 2735bigWig
  • 2718bam
  • 1402tsv
  • 1339bed narrowPeak
  • 733fastq
  • 705bigBed narrowPeak
  • 250bed bed3+
  • 228bed broadPeak
  • 220tagAlign
  • 198bigBed broadPeak
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2926Homo sapiens
Biosample type
  • 1749tissue
  • 619primary cell
  • 297in vitro differentiated cells
  • 264cell line
  • 3stem cell
Organ
  • 658pancreas
  • 589connective tissue
  • 426adipose tissue
  • 359liver
  • 305epithelium
  • 188heart
  • 159vasculature
  • 156blood vessel
  • 149brain
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 2743AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 2932hg19
  • 2847GRCh38
  • 5hg18
Lab
  • 2644AMP-T2D consortium
  • 238Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 214inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 76missing controlled_by
Audit category:
  • 35inconsistent control read length
  • 5inconsistent control run_type
  • 4inconsistent assembly
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

2932 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue38213
islet of Langerhans260314216211
liver14783202111
bone tissue58
heart left ventricle3292311
primary cell
monocyte538415
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1077121
pancreatic alpha cell1076121
pancreatic ductal cell413410
in vitro differentiated cells
adipocyte448811
cardiomyocytes593
neural progenitor cell71210
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm413
cell line
HepG2556111
smooth muscle cell of the coronary artery5248
GM12878541
EndoC_BH1331331
H1-hESC8
stem cell
hESC3
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