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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
19
ChIP-seq
6
ATAC-seq
3
small RNA-seq
1
DNase-seq
1
RRBS
Assay category
400
Transcription
19
DNA binding
7
DNA accessibility
1
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
15
August, 2017
14
July, 2019
5
October, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
423
bigWig
421
bam
399
tsv
20
fastq
12
bed narrowPeak
9
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
bigBed broadPeak
1
tagAlign
Organism
427
Homo sapiens
Biosample type
424
tissue
3
primary cell
Organ
655
pancreas
588
connective tissue
576
liver
425
adipose tissue
311
epithelium
188
heart
165
vasculature
162
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
43
blood
43
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
12
skeleton
10
spleen
2
pericardium
1
pituitary gland
Project
427
AMP
Genome assembly (visualization)
427
hg19
424
GRCh38
Lab
427
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
November, 2018
BIOSAMPLE
ASSAY
427 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
RRBS
tissue
adipose tissue
382
1
3
white adipose tissue
12
omental fat pad
4
3
1
1
1
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 3 more…
primary cell
mesenchymal stem cell of adipose
1
1
pericardium fibroblast
1
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